Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Pelagicola sp. LXJ1103 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
607766 bp
Thymine Count
603262 bp
Guanine Count
942397 bp
Cytosine Count
950305 bp
Genome Length
3103730 bp
Protein-coding Genes
2946 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| peptide abc transporter permease | DD563_13225 | Not Available | Positive | 2710038 - 2711144 | 40864.1 |
| microcin abc transporter atp-binding protein | DD563_13230 | Not Available | Positive | 2711141 - 2712730 | 57714.1 |
| oxygen-independent coproporphyrinogen iii oxidase | DD563_13235 | Not Available | Negative | 2712753 - 2714108 | 49471.1 |
| transcriptional regulator | DD563_13240 | Not Available | Positive | 2714173 - 2714919 | 27553.5 |
| universal stress protein | DD563_13245 | Not Available | Negative | 2715160 - 2716005 | 30123.4 |
| cytochrome-c oxidase, cbb3-type subunit i | DD563_13250 | Not Available | Positive | 2716237 - 2717841 | 59883.6 |
| cytochrome-c oxidase, cbb3-type subunit ii | DD563_13255 | Not Available | Positive | 2717859 - 2718584 | 27373.5 |
| ccoq/fixq family cbb3-type cytochrome c oxidase assembly chaperone | DD563_13260 | Not Available | Positive | 2718601 - 2718807 | 7944.44 |
| cytochrome-c oxidase, cbb3-type subunit iii | DD563_13265 | Not Available | Positive | 2718800 - 2719663 | 31265.2 |
| lysr family transcriptional regulator | DD563_13270 | Not Available | Positive | 2720068 - 2720973 | 31864.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
