Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Pelagicola sp. LXJ1103 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
607766 bp
Thymine Count
603262 bp
Guanine Count
942397 bp
Cytosine Count
950305 bp
Genome Length
3103730 bp
Protein-coding Genes
2946 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| integrase | DD563_13175 | Not Available | Negative | 2698707 - 2700236 | 56773.0 |
| Ncrna_class:srp_rna | Not Available | Not Available | Positive | 2700355 - 2700453 | Not Available |
| bifunctional 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase | DD563_13185 | Not Available | Negative | 2700504 - 2702426 | 68920.5 |
| nad(+) diphosphatase | DD563_13190 | Not Available | Positive | 2702604 - 2703548 | 33872.6 |
| hypothetical protein | DD563_13195 | Not Available | Positive | 2703588 - 2704055 | 17862.4 |
| hypothetical protein | DD563_13200 | Not Available | Negative | 2704177 - 2704971 | 28509.5 |
| prephenate dehydratase | DD563_13205 | Not Available | Negative | 2705202 - 2706035 | 29576.3 |
| cytochrome c family protein | DD563_13210 | Not Available | Positive | 2706155 - 2706673 | 18225.4 |
| abc transporter substrate-binding protein | DD563_13215 | Not Available | Positive | 2706887 - 2708800 | 70311.8 |
| microcin abc transporter permease | DD563_13220 | Not Available | Positive | 2708808 - 2709899 | 39920.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
