Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Pelagicola sp. LXJ1103 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
607766 bp
Thymine Count
603262 bp
Guanine Count
942397 bp
Cytosine Count
950305 bp
Genome Length
3103730 bp
Protein-coding Genes
2946 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| s-isoprenylcysteine methyltransferase | DD563_01190 | Not Available | Positive | 241967 - 242416 | 16729.9 |
| re/si-specific nad(p)(+) transhydrogenase subunit alpha | DD563_01195 | Not Available | Positive | 242563 - 244137 | 54955.0 |
| nad(p) transhydrogenase subunit beta | DD563_01200 | Not Available | Positive | 244152 - 245651 | 51687.4 |
| duf3422 domain-containing protein | DD563_01205 | Not Available | Positive | 245878 - 247158 | 47386.9 |
| peptide abc transporter | DD563_01210 | Not Available | Negative | 247209 - 248117 | 31403.3 |
| abc transporter substrate-binding protein | DD563_01215 | Not Available | Negative | 248083 - 249090 | 36182.1 |
| peptide abc transporter | DD563_01220 | Not Available | Negative | 249151 - 250857 | 60689.4 |
| glutathione abc transporter atp-binding protein gsia | DD563_01225 | Not Available | Positive | 251096 - 252796 | 59249.3 |
| amidohydrolase | DD563_01230 | Not Available | Positive | 252809 - 253969 | 40843.8 |
| lipopolysaccharide biosynthesis protein | DD563_01235 | Not Available | Negative | 253994 - 255031 | 37137.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
