Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Pelagicola sp. LXJ1103 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
607766 bp
Thymine Count
603262 bp
Guanine Count
942397 bp
Cytosine Count
950305 bp
Genome Length
3103730 bp
Protein-coding Genes
2946 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| phosphate abc transporter substrate-binding protein | DD563_13075 | Not Available | Negative | 2675517 - 2676392 | 31294.8 |
| phosphonate abc transporter atp-binding protein | DD563_13080 | Not Available | Negative | 2676416 - 2677195 | 28085.9 |
| hydroxyacid dehydrogenase | DD563_13085 | Not Available | Positive | 2677315 - 2678307 | 35652.0 |
| lysr family transcriptional regulator | DD563_13090 | Not Available | Positive | 2678310 - 2679176 | 30554.0 |
| hypothetical protein | DD563_13095 | Not Available | Negative | 2679422 - 2680627 | 45835.7 |
| dead/deah box helicase | DD563_13100 | Not Available | Negative | 2680662 - 2683628 | 112354.0 |
| hypothetical protein | DD563_13105 | Not Available | Negative | 2683625 - 2684059 | 16883.3 |
| hypothetical protein | DD563_13110 | Not Available | Negative | 2684091 - 2685365 | 47434.8 |
| restriction endonuclease subunit m | DD563_13115 | Not Available | Negative | 2685362 - 2687383 | 76146.4 |
| addiction module protein | DD563_13120 | Not Available | Negative | 2687449 - 2688537 | 40755.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
