Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Pelagicola sp. LXJ1103 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
607766 bp
Thymine Count
603262 bp
Guanine Count
942397 bp
Cytosine Count
950305 bp
Genome Length
3103730 bp
Protein-coding Genes
2946 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| c4-dicarboxylate abc transporter permease | DD563_13010 | Not Available | Positive | 2661206 - 2661700 | 18517.4 |
| tripartite transporter | DD563_13015 | Not Available | Positive | 2661700 - 2663247 | 53652.1 |
| gntr family transcriptional regulator | DD563_13020 | Not Available | Positive | 2663326 - 2664015 | 25682.7 |
| urocanate hydratase | DD563_13025 | Not Available | Negative | 2664019 - 2665686 | 60756.2 |
| n-formylglutamate deformylase | DD563_13030 | Not Available | Negative | 2665683 - 2666489 | 29706.9 |
| histidine ammonia-lyase | DD563_13035 | Not Available | Negative | 2666486 - 2668024 | 52894.1 |
| imidazolonepropionase | DD563_13040 | Not Available | Negative | 2668021 - 2669256 | 43409.1 |
| formimidoylglutamate deiminase | DD563_13045 | Not Available | Positive | 2669352 - 2670710 | 47841.0 |
| hypothetical protein | DD563_13050 | Not Available | Negative | 2670707 - 2671252 | 18311.9 |
| phosphonate abc transporter, permease protein phne | DD563_13070 | Not Available | Negative | 2674668 - 2675492 | 29254.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
