Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Pelagicola sp. LXJ1103 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
607766 bp
Thymine Count
603262 bp
Guanine Count
942397 bp
Cytosine Count
950305 bp
Genome Length
3103730 bp
Protein-coding Genes
2946 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| spermidine/putrescine abc transporter permease | DD563_12960 | Not Available | Positive | 2651737 - 2652564 | 29873.3 |
| spermidine/putrescine abc transporter permease | DD563_12965 | Not Available | Positive | 2652557 - 2653348 | 28170.6 |
| spermidine/putrescine abc transporter atp-binding protein | DD563_12970 | Not Available | Positive | 2653345 - 2654391 | 37779.3 |
| glycosyl transferase family 1 | DD563_12975 | Not Available | Positive | 2654413 - 2655690 | 47526.5 |
| cupin | DD563_12980 | Not Available | Positive | 2655747 - 2656046 | 10914.7 |
| cupin | DD563_12985 | Not Available | Positive | 2656056 - 2656400 | 12810.4 |
| aldehyde dehydrogenase | DD563_12990 | Not Available | Positive | 2656425 - 2657930 | 53208.8 |
| fad-dependent oxidoreductase | DD563_12995 | Not Available | Positive | 2657942 - 2659351 | 50603.4 |
| ion transport 2 | DD563_13000 | Not Available | Negative | 2659361 - 2659801 | 15832.8 |
| abc transporter substrate-binding protein | DD563_13005 | Not Available | Positive | 2660048 - 2661133 | 39123.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
