Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Pelagicola sp. LXJ1103 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
607766 bp
Thymine Count
603262 bp
Guanine Count
942397 bp
Cytosine Count
950305 bp
Genome Length
3103730 bp
Protein-coding Genes
2946 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| peptidoglycan editing factor pgef | DD563_12910 | Not Available | Positive | 2638700 - 2639455 | 26388.5 |
| hypothetical protein | DD563_12915 | Not Available | Positive | 2640180 - 2640938 | 27563.5 |
| asnc family transcriptional regulator | DD563_12920 | Not Available | Negative | 2640935 - 2641435 | 18393.1 |
| thioredoxin-disulfide reductase | DD563_12925 | Not Available | Positive | 2641656 - 2642621 | 34297.0 |
| hypothetical protein | DD563_12930 | Not Available | Positive | 2642653 - 2643483 | 29924.8 |
| adenylyltransferase | DD563_12935 | Not Available | Positive | 2643655 - 2645370 | 63776.2 |
| hypothetical protein | DD563_12940 | Not Available | Positive | 2645535 - 2648180 | 91545.6 |
| glycosyl transferase family 1 | DD563_12945 | Not Available | Negative | 2648122 - 2649465 | 48579.9 |
| gntr family transcriptional regulator | DD563_12950 | Not Available | Negative | 2649462 - 2650394 | 34303.5 |
| spermidine/putrescine abc transporter substrate-binding protein | DD563_12955 | Not Available | Positive | 2650573 - 2651616 | 37408.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
