Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Pelagicola sp. LXJ1103 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
607766 bp
Thymine Count
603262 bp
Guanine Count
942397 bp
Cytosine Count
950305 bp
Genome Length
3103730 bp
Protein-coding Genes
2946 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DD563_12860 | Not Available | Negative | 2631397 - 2631855 | 16844.1 |
| beta-ketoacyl-acp synthase iii | DD563_12865 | Not Available | Negative | 2632030 - 2633151 | 40394.9 |
| d-glycerate dehydrogenase | DD563_12870 | Not Available | Negative | 2633218 - 2634168 | 33794.1 |
| pp_02536 | DD563_12875 | Not Available | Negative | 2634165 - 2634503 | Not Available |
| pyrroline-5-carboxylate reductase | DD563_12880 | Not Available | Negative | 2634496 - 2635311 | 27290.1 |
| diacylglyceryl transferase | DD563_12885 | Not Available | Negative | 2635347 - 2635847 | 18723.0 |
| hypothetical protein | DD563_12890 | Not Available | Negative | 2636064 - 2636273 | 7360.84 |
| pyrroline-5-carboxylate reductase | DD563_12895 | Not Available | Negative | 2636415 - 2636663 | 9139.93 |
| prolipoprotein diacylglyceryl transferase | DD563_12900 | Not Available | Positive | 2636761 - 2637648 | 32488.6 |
| methyltransferase | DD563_12905 | Not Available | Positive | 2637645 - 2638703 | 36738.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
