Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Pelagicola sp. LXJ1103 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
607766 bp
Thymine Count
603262 bp
Guanine Count
942397 bp
Cytosine Count
950305 bp
Genome Length
3103730 bp
Protein-coding Genes
2946 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| c4-dicarboxylate abc transporter permease | DD563_12810 | Not Available | Negative | 2619687 - 2621096 | 49578.5 |
| c4-dicarboxylate abc transporter permease | DD563_12815 | Not Available | Negative | 2621100 - 2621732 | 22803.2 |
| c4-dicarboxylate abc transporter substrate-binding protein | DD563_12820 | Not Available | Negative | 2621845 - 2622861 | 36208.8 |
| crotonobetainyl-coa hydratase | DD563_12825 | Not Available | Negative | 2623016 - 2623798 | 28239.9 |
| acyl-coa synthetase | DD563_12830 | Not Available | Negative | 2623795 - 2625825 | 69965.8 |
| acyl-coa dehydrogenase | DD563_12835 | Not Available | Negative | 2626051 - 2627211 | 43115.5 |
| carnitine 3-dehydrogenase | DD563_12840 | Not Available | Negative | 2627213 - 2628622 | 51832.9 |
| 3-oxoacyl-[acyl-carrier-protein] reductase | DD563_12845 | Not Available | Negative | 2628648 - 2629406 | 25897.8 |
| nadph dependent quinone reductase | DD563_12850 | Not Available | Negative | 2629409 - 2630323 | 32782.6 |
| arac family transcriptional regulator | DD563_12855 | Not Available | Positive | 2630411 - 2631352 | 33966.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
