Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Pelagicola sp. LXJ1103 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
607766 bp
Thymine Count
603262 bp
Guanine Count
942397 bp
Cytosine Count
950305 bp
Genome Length
3103730 bp
Protein-coding Genes
2946 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DD563_12760 | Not Available | Negative | 2611231 - 2611455 | 8752.58 |
| heat-shock protein hsp20 | DD563_12765 | Not Available | Positive | 2611622 - 2612041 | 15540.6 |
| duf1150 domain-containing protein | DD563_12770 | Not Available | Positive | 2612054 - 2612281 | 8362.08 |
| hypothetical protein | DD563_12775 | Not Available | Positive | 2612423 - 2613280 | 31621.2 |
| amp-dependent synthetase | DD563_12780 | Not Available | Positive | 2613277 - 2614374 | 38096.6 |
| acetyl-coa c-acyltransferase | DD563_12785 | Not Available | Positive | 2614371 - 2615471 | 36088.5 |
| bioy family transporter | DD563_12790 | Not Available | Negative | 2615468 - 2616013 | 18265.4 |
| abc transporter permease | DD563_12795 | Not Available | Negative | 2616024 - 2616641 | 22159.8 |
| cobalt abc transporter | DD563_12800 | Not Available | Negative | 2616616 - 2617350 | 26216.7 |
| mfs transporter | DD563_12805 | Not Available | Positive | 2617516 - 2619690 | 77596.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
