Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Pelagicola sp. LXJ1103 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
607766 bp
Thymine Count
603262 bp
Guanine Count
942397 bp
Cytosine Count
950305 bp
Genome Length
3103730 bp
Protein-coding Genes
2946 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| phosphoserine transaminase | DD563_12660 | Not Available | Negative | 2591990 - 2593138 | 41185.9 |
| phosphoserine phosphatase serb | DD563_12665 | Not Available | Positive | 2593299 - 2594165 | 30342.7 |
| 6,7-dimethyl-8-ribityllumazine synthase | DD563_12670 | Not Available | Negative | 2594184 - 2594618 | 15381.8 |
| l-asparaginase | DD563_12675 | Not Available | Negative | 2595029 - 2596024 | 34053.0 |
| hypothetical protein | DD563_12680 | Not Available | Positive | 2596303 - 2596797 | 17549.4 |
| 23s rrna (adenine(2503)-c(2))-methyltransferase rlmn | DD563_12685 | Not Available | Positive | 2596984 - 2598171 | 43897.0 |
| hypothetical protein | DD563_12690 | Not Available | Positive | 2598346 - 2598558 | 7667.05 |
| hypothetical protein | DD563_12695 | Not Available | Positive | 2598812 - 2599003 | 7218.67 |
| lysine decarboxylase | DD563_12700 | Not Available | Negative | 2599010 - 2599834 | 30582.1 |
| 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate n-succinyltransferase | DD563_12705 | Not Available | Positive | 2600101 - 2600928 | 29202.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
