Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Pelagicola sp. LXJ1103 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
607766 bp
Thymine Count
603262 bp
Guanine Count
942397 bp
Cytosine Count
950305 bp
Genome Length
3103730 bp
Protein-coding Genes
2946 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| cap domain-containing protein | DD563_01140 | Not Available | Positive | 232984 - 233439 | 15805.9 |
| magnesium transporter | DD563_01145 | Not Available | Positive | 233555 - 234940 | 50041.3 |
| 5-formyltetrahydrofolate cyclo-ligase | DD563_01150 | Not Available | Positive | 234937 - 235497 | 19845.0 |
| peroxiredoxin | DD563_01155 | Not Available | Positive | 235487 - 235963 | 17208.4 |
| bacteriochlorophyll 4-vinyl reductase | DD563_01160 | Not Available | Negative | 236121 - 236717 | 21355.0 |
| magnesium-protoporphyrin ix monomethyl ester anaerobic oxidative cyclase | DD563_01165 | Not Available | Negative | 236710 - 238371 | 62764.1 |
| yebc/pmpr family dna-binding transcriptional regulator | DD563_01170 | Not Available | Positive | 238536 - 239276 | 26750.1 |
| hnh endonuclease | DD563_01175 | Not Available | Positive | 239484 - 240068 | 22184.5 |
| gamma-glutamyl-gamma-aminobutyrate hydrolase | DD563_01180 | Not Available | Positive | 240152 - 240931 | 27925.2 |
| hypothetical protein | DD563_01185 | Not Available | Negative | 240951 - 241571 | 21971.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
