Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Pelagicola sp. LXJ1103 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
607766 bp
Thymine Count
603262 bp
Guanine Count
942397 bp
Cytosine Count
950305 bp
Genome Length
3103730 bp
Protein-coding Genes
2946 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| phosphate acetyltransferase | DD563_12560 | Not Available | Positive | 2567261 - 2568205 | 32215.3 |
| acetate kinase | DD563_12565 | Not Available | Positive | 2568202 - 2569281 | 37318.8 |
| formate dehydrogenase | DD563_12570 | Not Available | Positive | 2569309 - 2572134 | 104101.0 |
| hypothetical protein | DD563_12575 | Not Available | Positive | 2572116 - 2572364 | 9147.88 |
| (fe-s)-binding protein | DD563_12580 | Not Available | Positive | 2572366 - 2573139 | 28103.6 |
| dibenzothiophene desulfurase | DD563_12585 | Not Available | Positive | 2573141 - 2574019 | 31143.9 |
| hypothetical protein | DD563_12590 | Not Available | Positive | 2574235 - 2575065 | 30699.4 |
| 30s ribosomal protein s1 | DD563_12595 | Not Available | Negative | 2575297 - 2576979 | 61649.9 |
| (d)cmp kinase | DD563_12600 | Not Available | Negative | 2577281 - 2577898 | 21519.7 |
| cystathionine gamma-synthase | DD563_12605 | Not Available | Negative | 2578043 - 2579191 | 41576.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
