Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Pelagicola sp. LXJ1103 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
607766 bp
Thymine Count
603262 bp
Guanine Count
942397 bp
Cytosine Count
950305 bp
Genome Length
3103730 bp
Protein-coding Genes
2946 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DD563_12510 | Not Available | Negative | 2557347 - 2557643 | 11049.5 |
| xre family transcriptional regulator | DD563_12515 | Not Available | Negative | 2557648 - 2558070 | 15646.5 |
| hypothetical protein | DD563_12520 | Not Available | Positive | 2558437 - 2559531 | 41514.8 |
| peptidase t4 | DD563_12525 | Not Available | Negative | 2560197 - 2561180 | 32736.3 |
| creatininase | DD563_12530 | Not Available | Positive | 2561367 - 2562575 | 44913.3 |
| hypothetical protein | DD563_12535 | Not Available | Negative | 2562678 - 2562860 | 6588.18 |
| hypothetical protein | DD563_12540 | Not Available | Positive | 2562859 - 2563125 | 9805.34 |
| duf1523 domain-containing protein | DD563_12545 | Not Available | Positive | 2563136 - 2563699 | 21891.1 |
| gntr family transcriptional regulator | DD563_12550 | Not Available | Positive | 2563750 - 2565237 | 54808.8 |
| sulfoacetaldehyde acetyltransferase | DD563_12555 | Not Available | Positive | 2565384 - 2567159 | 63606.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
