Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Pelagicola sp. LXJ1103 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
607766 bp
Thymine Count
603262 bp
Guanine Count
942397 bp
Cytosine Count
950305 bp
Genome Length
3103730 bp
Protein-coding Genes
2946 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| laci family transcriptional regulator | DD563_12460 | Not Available | Negative | 2546831 - 2547856 | 37245.9 |
| Trna-arg | Not Available | Not Available | Positive | 2547978 - 2548054 | Not Available |
| hypothetical protein | DD563_12470 | Not Available | Positive | 2548210 - 2549055 | 30915.9 |
| plasmid mobilization relaxosome protein mobc | DD563_12475 | Not Available | Positive | 2549244 - 2549525 | 10187.8 |
| mobilization relaxase | DD563_12480 | Not Available | Positive | 2549519 - 2551048 | 56703.4 |
| hypothetical protein | DD563_12485 | Not Available | Negative | 2551388 - 2552527 | 42512.1 |
| addiction module antidote protein, higa family | DD563_12490 | Not Available | Negative | 2552836 - 2553126 | 10637.0 |
| plasmid maintenance system killer | DD563_12495 | Not Available | Negative | 2553139 - 2553420 | 10167.2 |
| hypothetical protein | DD563_12500 | Not Available | Positive | 2553688 - 2556159 | 93769.4 |
| hypothetical protein | DD563_12505 | Not Available | Positive | 2556156 - 2557148 | 39281.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
