Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Pelagicola sp. LXJ1103 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
607766 bp
Thymine Count
603262 bp
Guanine Count
942397 bp
Cytosine Count
950305 bp
Genome Length
3103730 bp
Protein-coding Genes
2946 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dna topoisomerase (atp-hydrolyzing) subunit b | DD563_12410 | Not Available | Positive | 2536788 - 2539205 | 89189.1 |
| hypothetical protein | DD563_12415 | Not Available | Positive | 2539457 - 2539672 | 8423.05 |
| Trna-lys | Not Available | Not Available | Positive | 2540005 - 2540080 | Not Available |
| diaminopimelate epimerase | DD563_12425 | Not Available | Positive | 2540189 - 2541046 | 30659.4 |
| trna (n(6)-l-threonylcarbamoyladenosine(37)-c(2))- methylthiotransferase mtab | DD563_12430 | Not Available | Positive | 2541043 - 2542290 | 45391.5 |
| glutathione s-transferase | DD563_12435 | Not Available | Positive | 2542364 - 2542966 | 22137.8 |
| hypothetical protein | DD563_12440 | Not Available | Negative | 2543027 - 2543713 | 24546.0 |
| ubiquinol-cytochrome c reductase iron-sulfur subunit | DD563_12445 | Not Available | Positive | 2543943 - 2544527 | 20588.2 |
| cytochrome b | DD563_12450 | Not Available | Positive | 2544539 - 2545882 | 50195.4 |
| cytochrome c1 | DD563_12455 | Not Available | Positive | 2545897 - 2546742 | 30708.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
