Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Pelagicola sp. LXJ1103 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
607766 bp
Thymine Count
603262 bp
Guanine Count
942397 bp
Cytosine Count
950305 bp
Genome Length
3103730 bp
Protein-coding Genes
2946 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DD563_12360 | Not Available | Positive | 2525715 - 2527202 | 50223.8 |
| flagellar basal body rod modification protein | DD563_12365 | Not Available | Positive | 2527216 - 2527908 | 23617.8 |
| 2-polyprenylphenol 6-hydroxylase | DD563_12370 | Not Available | Negative | 2527929 - 2529461 | 56162.1 |
| bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase ubie | DD563_12375 | Not Available | Negative | 2529466 - 2530209 | 27553.1 |
| dna-formamidopyrimidine glycosylase | DD563_12380 | Not Available | Positive | 2530294 - 2531145 | 30745.0 |
| enoyl-coa hydratase | DD563_12385 | Not Available | Positive | 2531210 - 2531986 | 27947.8 |
| 30s ribosomal protein s20 | DD563_12390 | Not Available | Positive | 2532182 - 2532445 | 9690.93 |
| chromosomal replication initiator protein dnaa | DD563_12395 | Not Available | Positive | 2532936 - 2534312 | 52119.5 |
| dna polymerase iii subunit beta | DD563_12400 | Not Available | Positive | 2534436 - 2535554 | 40511.3 |
| dna replication/repair protein recf | DD563_12405 | Not Available | Positive | 2535599 - 2536702 | 39693.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
