Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Pelagicola sp. LXJ1103 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
607766 bp
Thymine Count
603262 bp
Guanine Count
942397 bp
Cytosine Count
950305 bp
Genome Length
3103730 bp
Protein-coding Genes
2946 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| flagellar hook-basal body protein flie | DD563_12310 | Not Available | Negative | 2519545 - 2519832 | 9955.86 |
| flagellar basal body rod protein flgc | DD563_12315 | Not Available | Negative | 2519884 - 2520273 | 14320.6 |
| flagellar biosynthesis protein flgb | DD563_12320 | Not Available | Negative | 2520285 - 2520674 | 14071.8 |
| flagellum-specific atp synthase flii | DD563_12325 | Not Available | Positive | 2520765 - 2522180 | 49737.1 |
| flagellar protein | DD563_12330 | Not Available | Negative | 2522188 - 2522991 | 29136.3 |
| flagellar biosynthesis repressor flbt | DD563_12335 | Not Available | Negative | 2522988 - 2523392 | 14844.9 |
| flagellar biosynthesis regulatory protein flaf | DD563_12340 | Not Available | Negative | 2523389 - 2523751 | 13161.0 |
| flagellin | DD563_12345 | Not Available | Negative | 2523842 - 2524774 | 31982.4 |
| flagellar protein flgn | DD563_12350 | Not Available | Negative | 2524989 - 2525348 | 13186.9 |
| chemotaxis protein chel | DD563_12355 | Not Available | Negative | 2525338 - 2525634 | 10222.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
