Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Pelagicola sp. LXJ1103 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
607766 bp
Thymine Count
603262 bp
Guanine Count
942397 bp
Cytosine Count
950305 bp
Genome Length
3103730 bp
Protein-coding Genes
2946 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| flagellar biosynthesis protein flha | DD563_12260 | Not Available | Positive | 2511719 - 2513806 | 75040.3 |
| flagellar biosynthesis protein flir | DD563_12265 | Not Available | Positive | 2513803 - 2514579 | 27243.7 |
| flagellar biosynthesis protein flhb | DD563_12270 | Not Available | Positive | 2514579 - 2515664 | 39416.2 |
| hypothetical protein | DD563_12275 | Not Available | Positive | 2515661 - 2516086 | 15602.2 |
| flagellar basal body-associated protein flil | DD563_12280 | Not Available | Negative | 2516074 - 2516589 | 18303.1 |
| flagellar basal body l-ring protein | DD563_12285 | Not Available | Negative | 2516601 - 2517329 | 26234.3 |
| flagella basal body p-ring formation protein flga | DD563_12290 | Not Available | Negative | 2517338 - 2517754 | 14621.9 |
| flagellar basal-body rod protein flgg | DD563_12295 | Not Available | Negative | 2517754 - 2518539 | 27405.1 |
| flagellar basal-body rod protein flgf | DD563_12300 | Not Available | Negative | 2518550 - 2519269 | 25574.2 |
| flagellar biosynthetic protein fliq | DD563_12305 | Not Available | Negative | 2519271 - 2519540 | 9702.34 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
