Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Pelagicola sp. LXJ1103 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
607766 bp
Thymine Count
603262 bp
Guanine Count
942397 bp
Cytosine Count
950305 bp
Genome Length
3103730 bp
Protein-coding Genes
2946 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| flagellar biosynthetic protein flip | DD563_12210 | Not Available | Negative | 2502897 - 2503625 | 26006.0 |
| hypothetical protein | DD563_12215 | Not Available | Negative | 2503622 - 2503918 | 10556.5 |
| flagellar biosynthesis protein | DD563_12220 | Not Available | Negative | 2503918 - 2504517 | 21473.3 |
| flagellar m-ring protein flif | DD563_12225 | Not Available | Negative | 2504517 - 2506121 | 56070.4 |
| flagellar basal body protein flil | DD563_12230 | Not Available | Positive | 2506246 - 2506746 | 17665.5 |
| hypothetical protein | DD563_12235 | Not Available | Positive | 2506757 - 2507128 | 13033.7 |
| hypothetical protein | DD563_12240 | Not Available | Positive | 2507125 - 2507721 | 21191.7 |
| flagellar motor stator protein mota | DD563_12245 | Not Available | Positive | 2507793 - 2508662 | 31471.7 |
| hypothetical protein | DD563_12250 | Not Available | Positive | 2508659 - 2510923 | 80013.5 |
| hypothetical protein | DD563_12255 | Not Available | Positive | 2511046 - 2511717 | 24453.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
