Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Pelagicola sp. LXJ1103 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
607766 bp
Thymine Count
603262 bp
Guanine Count
942397 bp
Cytosine Count
950305 bp
Genome Length
3103730 bp
Protein-coding Genes
2946 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DD563_12160 | Not Available | Negative | 2492048 - 2492584 | 18414.6 |
| 16s rrna (uracil(1498)-n(3))-methyltransferase | DD563_12165 | Not Available | Negative | 2492581 - 2493324 | 26462.8 |
| 4-hydroxybenzoate octaprenyltransferase | DD563_12170 | Not Available | Positive | 2493336 - 2494301 | 35443.6 |
| hypothetical protein | DD563_12175 | Not Available | Positive | 2494365 - 2496296 | 68316.5 |
| hypothetical protein | DD563_12180 | Not Available | Positive | 2496293 - 2496619 | 12394.5 |
| chemotaxis protein motb | DD563_12185 | Not Available | Positive | 2496827 - 2497663 | 29681.3 |
| flagellar biosynthesis protein flge | DD563_12190 | Not Available | Positive | 2497787 - 2499091 | 44780.2 |
| flagellar hook-associated protein flgk | DD563_12195 | Not Available | Positive | 2499146 - 2500606 | 50600.8 |
| flagellar biosynthesis protein flgl | DD563_12200 | Not Available | Positive | 2500610 - 2501617 | 34793.2 |
| flagellar biosynthesis protein flga | DD563_12205 | Not Available | Positive | 2501614 - 2502729 | 38792.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
