Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Pelagicola sp. LXJ1103 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
607766 bp
Thymine Count
603262 bp
Guanine Count
942397 bp
Cytosine Count
950305 bp
Genome Length
3103730 bp
Protein-coding Genes
2946 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| phosphoglucosamine mutase | DD563_12110 | Not Available | Positive | 2480627 - 2481967 | 47701.3 |
| udp-glucuronate 5-epimerase | DD563_12115 | Not Available | Negative | 2481964 - 2482977 | 37336.7 |
| dtdp-4-dehydrorhamnose 3,5-epimerase | DD563_12120 | Not Available | Positive | 2483123 - 2483692 | 20556.1 |
| dtdp-glucose 4,6-dehydratase | DD563_12125 | Not Available | Positive | 2483689 - 2484726 | 37356.9 |
| dtdp-4-dehydrorhamnose reductase | DD563_12130 | Not Available | Positive | 2484764 - 2485606 | 29453.1 |
| glucose-1-phosphate thymidylyltransferase | DD563_12135 | Not Available | Negative | 2485603 - 2486481 | 31382.7 |
| sugar transferase | DD563_12140 | Not Available | Negative | 2486573 - 2487778 | 43170.6 |
| sugar transporter | DD563_12145 | Not Available | Positive | 2488165 - 2489409 | 44578.6 |
| flavin reductase | DD563_12150 | Not Available | Positive | 2489662 - 2490600 | 33069.2 |
| glutamate--cysteine ligase | DD563_12155 | Not Available | Negative | 2490607 - 2491977 | 50912.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
