Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Pelagicola sp. LXJ1103 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
607766 bp
Thymine Count
603262 bp
Guanine Count
942397 bp
Cytosine Count
950305 bp
Genome Length
3103730 bp
Protein-coding Genes
2946 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| n-acetylmuramoyl-l-alanine amidase | DD563_01090 | Not Available | Positive | 226230 - 226931 | 25659.8 |
| Ncrna_class:rnase_p_rna | Not Available | Not Available | Positive | 226943 - 227345 | Not Available |
| 50s ribosomal protein l33 | DD563_01100 | Not Available | Positive | 227527 - 227694 | 6396.96 |
| hypothetical protein | DD563_01105 | Not Available | Negative | 227784 - 228221 | 15671.8 |
| bax inhibitor (bi)-1/ycca family protein | DD563_01110 | Not Available | Negative | 228417 - 229139 | 26052.4 |
| hypothetical protein | DD563_01115 | Not Available | Negative | 229267 - 229461 | 7202.82 |
| lysr family transcriptional regulator | DD563_01120 | Not Available | Positive | 229588 - 230460 | 31127.5 |
| zinc-binding dehydrogenase | DD563_01125 | Not Available | Negative | 230447 - 231409 | 33726.1 |
| transcriptional regulator | DD563_01130 | Not Available | Positive | 231702 - 232061 | 13490.1 |
| histidinol-phosphatase | DD563_01135 | Not Available | Positive | 232121 - 232921 | 27541.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
