Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Pelagicola sp. LXJ1103 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
607766 bp
Thymine Count
603262 bp
Guanine Count
942397 bp
Cytosine Count
950305 bp
Genome Length
3103730 bp
Protein-coding Genes
2946 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| aminotransferase degt | DD563_12060 | Not Available | Positive | 2468055 - 2469185 | 40169.2 |
| hypothetical protein | DD563_12065 | Not Available | Positive | 2469173 - 2470147 | 35764.8 |
| hypothetical protein | DD563_12070 | Not Available | Positive | 2470153 - 2471415 | 45001.3 |
| marr family transcriptional regulator | DD563_12075 | Not Available | Positive | 2471418 - 2472761 | 50933.9 |
| hypothetical protein | DD563_12080 | Not Available | Positive | 2472758 - 2473972 | 43357.1 |
| group 1 glycosyl transferase | DD563_12085 | Not Available | Positive | 2473969 - 2475105 | 41479.3 |
| udp-n-acetylglucosamine 2-epimerase (non-hydrolyzing) | DD563_12090 | Not Available | Positive | 2475102 - 2476184 | 38770.8 |
| glycosyltransferase wbub | DD563_12095 | Not Available | Positive | 2476171 - 2477421 | 45554.6 |
| chain-length determining protein | DD563_12100 | Not Available | Negative | 2477427 - 2479544 | 76331.5 |
| serine/threonine protein phosphatase | DD563_12105 | Not Available | Positive | 2479779 - 2480534 | 27124.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
