Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Pelagicola sp. LXJ1103 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
607766 bp
Thymine Count
603262 bp
Guanine Count
942397 bp
Cytosine Count
950305 bp
Genome Length
3103730 bp
Protein-coding Genes
2946 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| trypsin | DD563_11960 | Not Available | Positive | 2444549 - 2445337 | 28085.6 |
| serine protease | DD563_11965 | Not Available | Positive | 2445334 - 2446137 | 27141.6 |
| heat-shock protein | DD563_11970 | Not Available | Positive | 2446277 - 2446732 | 16648.6 |
| succinate-semialdehyde dehydrogenase (nadp(+)) | DD563_11975 | Not Available | Negative | 2446830 - 2448299 | 52463.9 |
| branched-chain amino acid abc transporter permease | DD563_11980 | Not Available | Negative | 2448516 - 2449574 | 38174.1 |
| branched-chain amino acid abc transporter permease | DD563_11985 | Not Available | Negative | 2449584 - 2450486 | 31854.3 |
| abc transporter atp-binding protein | DD563_11990 | Not Available | Negative | 2450479 - 2451270 | 29183.6 |
| abc transporter atp-binding protein | DD563_11995 | Not Available | Negative | 2451273 - 2452136 | 31343.8 |
| abc transporter permease | DD563_12000 | Not Available | Negative | 2452275 - 2453621 | 49116.2 |
| two-component sensor histidine kinase | DD563_12005 | Not Available | Negative | 2454030 - 2456009 | 71448.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
