Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Pelagicola sp. LXJ1103 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
607766 bp
Thymine Count
603262 bp
Guanine Count
942397 bp
Cytosine Count
950305 bp
Genome Length
3103730 bp
Protein-coding Genes
2946 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf1285 domain-containing protein | DD563_11910 | Not Available | Negative | 2431917 - 2432498 | 20885.8 |
| aaa family atpase | DD563_11915 | Not Available | Positive | 2432568 - 2433575 | 35968.5 |
| duf58 domain-containing protein | DD563_11920 | Not Available | Positive | 2433617 - 2434468 | 31046.1 |
| lyttr family transcriptional regulator | DD563_11925 | Not Available | Positive | 2434465 - 2437221 | 97384.9 |
| hypothetical protein | DD563_11930 | Not Available | Positive | 2437218 - 2439263 | 73749.5 |
| hypothetical protein | DD563_11935 | Not Available | Negative | 2439267 - 2439632 | 13474.0 |
| duf599 domain-containing protein | DD563_11940 | Not Available | Negative | 2439691 - 2440401 | 25661.6 |
| fad-binding oxidoreductase | DD563_11945 | Not Available | Positive | 2440531 - 2441970 | 50859.2 |
| 2-hydroxy-acid oxidase | DD563_11950 | Not Available | Positive | 2442018 - 2443145 | 38455.7 |
| glycolate oxidase iron-sulfur subunit | DD563_11955 | Not Available | Positive | 2443147 - 2444481 | 48007.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
