Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Pelagicola sp. LXJ1103 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
607766 bp
Thymine Count
603262 bp
Guanine Count
942397 bp
Cytosine Count
950305 bp
Genome Length
3103730 bp
Protein-coding Genes
2946 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| endonuclease iii | DD563_11860 | Not Available | Positive | 2421342 - 2421995 | 24296.3 |
| adenosine kinase | DD563_11865 | Not Available | Positive | 2421992 - 2422975 | 34238.6 |
| hypothetical protein | DD563_11870 | Not Available | Negative | 2423235 - 2424053 | 31262.0 |
| glycosyl transferase | DD563_11875 | Not Available | Positive | 2424202 - 2425779 | 61389.2 |
| histidine triad nucleotide-binding protein | DD563_11880 | Not Available | Positive | 2425815 - 2426198 | 13797.5 |
| duf1203 domain-containing protein | DD563_11885 | Not Available | Positive | 2426270 - 2426761 | 17516.1 |
| multidrug abc transporter atp-binding protein | DD563_11890 | Not Available | Negative | 2426775 - 2427704 | 33641.6 |
| zinc-finger domain-containing protein | DD563_11895 | Not Available | Positive | 2427780 - 2427959 | 6706.02 |
| dna polymerase i | DD563_11900 | Not Available | Positive | 2428099 - 2430900 | 101854.0 |
| hydroxypyruvate isomerase | DD563_11905 | Not Available | Negative | 2431167 - 2431916 | 27813.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
