Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Pelagicola sp. LXJ1103 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
607766 bp
Thymine Count
603262 bp
Guanine Count
942397 bp
Cytosine Count
950305 bp
Genome Length
3103730 bp
Protein-coding Genes
2946 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| nadh:flavin oxidoreductase | DD563_11810 | Not Available | Positive | 2408301 - 2410376 | 75986.9 |
| nadh:flavin oxidoreductase | DD563_11815 | Not Available | Positive | 2410378 - 2412924 | 94322.5 |
| hypothetical protein | DD563_11820 | Not Available | Positive | 2412921 - 2413127 | 7216.7 |
| ammonium transporter | DD563_11825 | Not Available | Negative | 2413219 - 2414598 | 48819.0 |
| alpha/beta hydrolase | DD563_11830 | Not Available | Negative | 2414895 - 2416361 | 51233.4 |
| 3-isopropylmalate dehydrogenase | DD563_11835 | Not Available | Negative | 2416386 - 2417492 | 39653.5 |
| hydrogen peroxide-inducible genes activator | DD563_11840 | Not Available | Negative | 2417796 - 2418722 | 33409.1 |
| phosphoribosyl-amp cyclohydrolase | DD563_11845 | Not Available | Positive | 2418849 - 2419394 | 19435.4 |
| hypothetical protein | DD563_11850 | Not Available | Negative | 2419590 - 2420258 | 22876.0 |
| 6-o-methylguanine dna methyltransferase | DD563_11855 | Not Available | Negative | 2420383 - 2421243 | 30896.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
