Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Pelagicola sp. LXJ1103 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
607766 bp
Thymine Count
603262 bp
Guanine Count
942397 bp
Cytosine Count
950305 bp
Genome Length
3103730 bp
Protein-coding Genes
2946 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| gfa family protein | DD563_11760 | Not Available | Negative | 2397332 - 2397715 | 13742.2 |
| 2-isopropylmalate synthase | DD563_11765 | Not Available | Negative | 2397712 - 2399166 | 51051.6 |
| nad+ synthase | DD563_11770 | Not Available | Positive | 2399333 - 2400994 | 60259.4 |
| amine oxidase | DD563_11775 | Not Available | Negative | 2400998 - 2402353 | 46137.4 |
| hypothetical protein | DD563_11780 | Not Available | Negative | 2402350 - 2403117 | 27882.8 |
| abc transporter | DD563_11785 | Not Available | Positive | 2403411 - 2404532 | 40892.9 |
| spermidine/putrescine abc transporter | DD563_11790 | Not Available | Positive | 2404733 - 2405593 | 31653.7 |
| spermidine/putrescine abc transporter | DD563_11795 | Not Available | Positive | 2405590 - 2406402 | 30046.4 |
| fe3+/spermidine/putrescine abc transporter atp-binding protein | DD563_11800 | Not Available | Positive | 2406411 - 2407508 | 40446.4 |
| transcriptional regulator | DD563_11805 | Not Available | Positive | 2407607 - 2408311 | 26417.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
