Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Pelagicola sp. LXJ1103 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
607766 bp
Thymine Count
603262 bp
Guanine Count
942397 bp
Cytosine Count
950305 bp
Genome Length
3103730 bp
Protein-coding Genes
2946 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| peptidase m16 | DD563_11710 | Not Available | Positive | 2385489 - 2386751 | 45240.0 |
| 30s ribosomal protein s5 alanine n-acetyltransferase | DD563_11715 | Not Available | Positive | 2386751 - 2387338 | 22470.9 |
| zn-dependent hydrolase | DD563_11720 | Not Available | Positive | 2387396 - 2388232 | 30094.1 |
| hydroxyacid dehydrogenase | DD563_11725 | Not Available | Positive | 2388272 - 2389687 | 50001.5 |
| fe(3+) abc transporter substrate-binding protein | DD563_11730 | Not Available | Negative | 2389752 - 2390708 | 35230.8 |
| acyl-coa synthetase | DD563_11735 | Not Available | Positive | 2390987 - 2392870 | 68228.0 |
| cupin | DD563_11740 | Not Available | Positive | 2392883 - 2393239 | 13357.8 |
| 2-isopropylmalate synthase | DD563_11745 | Not Available | Negative | 2393277 - 2394860 | 56850.5 |
| c factor, cell signaling protein | DD563_11750 | Not Available | Positive | 2395126 - 2395779 | 22737.1 |
| cryptochrome/photolyase family protein | DD563_11755 | Not Available | Positive | 2395773 - 2397302 | 57830.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
