Pelagicola sp. LXJ1103

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Rhodobacterales

Family

Roseobacteraceae

Genus

Shimia

Description

Pelagicola sp. LXJ1103 is a Gram-negative bacterium characterized by possessing a single replicon. The organism is cataloged under the accession number QFAR00000000.1, which indicates its genomic data is available in public databases for further research and analysis. As a member of the Pelagicola genus, this bacterium is likely to inhabit marine environments, where it may play a role in the microbial communities associated with oceanic ecosystems. The Gram-negative classification suggests that Pelagicola sp. LXJ1103 has a unique cell wall structure, which is typically thin and surrounded by an outer membrane containing lipopolysaccharides. This structural feature can influence its interactions with other microorganisms, as well as its response to environmental conditions. The presence of a single replicon is significant, as it may reflect the organism's genomic organization and replication strategy. This trait could have implications for its growth and adaptability in marine habitats. In summary, Pelagicola sp. LXJ1103, as a Gram-negative bacterium with one replicon, contributes to our understanding of microbial diversity in marine ecosystems, potentially influencing nutrient cycling and ecological interactions within its environment. Further research into this organism could provide insights into its ecological roles and the functional capabilities of the Pelagicola genus as a whole.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderRhodobacterales
FamilyRoseobacteraceae
GenusShimia
SpeciesPelagicola sp. LXJ1103
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pelagicola sp. LXJ1103 contig2, whole genome shotgun sequence.

Gene Summary

Adenine Count

607766 bp

Thymine Count

603262 bp

Guanine Count

942397 bp

Cytosine Count

950305 bp

Genome Length

3103730 bp

Protein-coding Genes

2946 genes

Non-Coding Genes

61 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
peptidase m16DD563_11710Not AvailablePositive2385489 - 238675145240.0
30s ribosomal protein s5 alanine n-acetyltransferaseDD563_11715Not AvailablePositive2386751 - 238733822470.9
zn-dependent hydrolaseDD563_11720Not AvailablePositive2387396 - 238823230094.1
hydroxyacid dehydrogenaseDD563_11725Not AvailablePositive2388272 - 238968750001.5
fe(3+) abc transporter substrate-binding proteinDD563_11730Not AvailableNegative2389752 - 239070835230.8
acyl-coa synthetaseDD563_11735Not AvailablePositive2390987 - 239287068228.0
cupinDD563_11740Not AvailablePositive2392883 - 239323913357.8
2-isopropylmalate synthaseDD563_11745Not AvailableNegative2393277 - 239486056850.5
c factor, cell signaling proteinDD563_11750Not AvailablePositive2395126 - 239577922737.1
cryptochrome/photolyase family proteinDD563_11755Not AvailablePositive2395773 - 239730257830.1

Displaying genes 2311 – 2320 of 3007 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.