Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Pelagicola sp. LXJ1103 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
607766 bp
Thymine Count
603262 bp
Guanine Count
942397 bp
Cytosine Count
950305 bp
Genome Length
3103730 bp
Protein-coding Genes
2946 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| l,d-transpeptidase | DD563_11660 | Not Available | Negative | 2373273 - 2373839 | 20620.9 |
| type i dna topoisomerase | DD563_11665 | Not Available | Negative | 2373928 - 2376642 | 99073.9 |
| dna-protecting protein dpra | DD563_11670 | Not Available | Negative | 2376759 - 2377973 | 43220.3 |
| metalloprotease tldd | DD563_11675 | Not Available | Negative | 2378177 - 2379598 | 49405.8 |
| cytochrome c oxidase subunit ii | DD563_11680 | Not Available | Positive | 2379790 - 2380677 | 32322.7 |
| protoheme ix farnesyltransferase | DD563_11685 | Not Available | Positive | 2380774 - 2381736 | 34544.6 |
| cytochrome c oxidase assembly protein | DD563_11690 | Not Available | Positive | 2381906 - 2382481 | 21550.3 |
| cytochrome c oxidase subunit 3 | DD563_11695 | Not Available | Positive | 2382507 - 2383319 | 30672.4 |
| surf1 family protein | DD563_11700 | Not Available | Positive | 2383424 - 2384107 | 24812.3 |
| threonine synthase | DD563_11705 | Not Available | Positive | 2384104 - 2385492 | 50089.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
