Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Pelagicola sp. LXJ1103 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
607766 bp
Thymine Count
603262 bp
Guanine Count
942397 bp
Cytosine Count
950305 bp
Genome Length
3103730 bp
Protein-coding Genes
2946 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| type ii secretion system protein e | DD563_11610 | Not Available | Negative | 2363698 - 2365137 | 53077.7 |
| pilus assembly protein cpae | DD563_11615 | Not Available | Negative | 2365151 - 2366380 | 44740.6 |
| hypothetical protein | DD563_11620 | Not Available | Negative | 2366657 - 2367337 | 24536.1 |
| general secretion pathway protein | DD563_11625 | Not Available | Negative | 2367341 - 2368762 | 50064.9 |
| flp pilus assembly protein cpab | DD563_11630 | Not Available | Negative | 2368969 - 2369838 | 30724.0 |
| hypothetical protein | DD563_11635 | Not Available | Negative | 2370042 - 2370230 | 6161.42 |
| hypothetical protein | DD563_11640 | Not Available | Negative | 2370407 - 2370613 | 6554.91 |
| lytic murein transglycosylase | DD563_11645 | Not Available | Positive | 2370956 - 2371789 | 29189.9 |
| succinyl-coa--3-ketoacid-coa transferase | DD563_11650 | Not Available | Negative | 2371865 - 2372485 | 21877.5 |
| succinyl-coa--3-ketoacid-coa transferase | DD563_11655 | Not Available | Negative | 2372487 - 2373191 | 25492.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
