Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Pelagicola sp. LXJ1103 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
607766 bp
Thymine Count
603262 bp
Guanine Count
942397 bp
Cytosine Count
950305 bp
Genome Length
3103730 bp
Protein-coding Genes
2946 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| antifreeze protein | DD563_01040 | Not Available | Negative | 217105 - 218217 | 39999.8 |
| hypothetical protein | DD563_01045 | Not Available | Negative | 218244 - 219173 | 33796.2 |
| toxic anion resistance protein | DD563_01050 | Not Available | Negative | 219205 - 220401 | 43679.8 |
| hypothetical protein | DD563_01055 | Not Available | Negative | 220445 - 221341 | 32074.7 |
| pseudouridine synthase | DD563_01060 | Not Available | Negative | 221661 - 222452 | 29414.4 |
| pp_00210 | DD563_01065 | Not Available | Positive | 222513 - 222965 | Not Available |
| hypothetical protein | DD563_01070 | Not Available | Positive | 223003 - 223659 | 23441.0 |
| asp-trna(asn)/glu-trna(gln) amidotransferase gatcab subunit c | DD563_01075 | Not Available | Positive | 223699 - 223986 | 10393.4 |
| asp-trna(asn)/glu-trna(gln) amidotransferase gatcab subunit a | DD563_01080 | Not Available | Positive | 223986 - 225467 | 51845.9 |
| hypothetical protein | DD563_01085 | Not Available | Positive | 225500 - 226237 | 25455.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
