Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Pelagicola sp. LXJ1103 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
607766 bp
Thymine Count
603262 bp
Guanine Count
942397 bp
Cytosine Count
950305 bp
Genome Length
3103730 bp
Protein-coding Genes
2946 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 2-dehydro-3-deoxyphosphooctonate aldolase | DD563_11560 | Not Available | Negative | 2353279 - 2353704 | 15537.5 |
| lysine--trna ligase | DD563_11565 | Not Available | Positive | 2353826 - 2355409 | 59786.7 |
| cytochrome c | DD563_11570 | Not Available | Positive | 2355470 - 2355868 | 13700.6 |
| ligase-associated dna damage response dexh box helicase | DD563_11575 | Not Available | Negative | 2355865 - 2358285 | 88602.0 |
| atpase | DD563_11580 | Not Available | Negative | 2358341 - 2359654 | 48843.2 |
| hypothetical protein | DD563_11585 | Not Available | Negative | 2359758 - 2360252 | 17507.1 |
| hypothetical protein | DD563_11590 | Not Available | Negative | 2360279 - 2361136 | 31646.3 |
| hypothetical protein | DD563_11595 | Not Available | Negative | 2361166 - 2361714 | 19259.8 |
| pilus assembly protein tadc | DD563_11600 | Not Available | Negative | 2361740 - 2362711 | 35750.1 |
| pilus assembly protein tadb | DD563_11605 | Not Available | Negative | 2362724 - 2363692 | 35576.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
