Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Pelagicola sp. LXJ1103 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
607766 bp
Thymine Count
603262 bp
Guanine Count
942397 bp
Cytosine Count
950305 bp
Genome Length
3103730 bp
Protein-coding Genes
2946 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dna polymerase iii subunit delta | DD563_11510 | Not Available | Positive | 2344368 - 2345393 | 36814.6 |
| hypothetical protein | DD563_11515 | Not Available | Positive | 2345390 - 2346145 | 26748.0 |
| aldehyde-activating protein | DD563_11520 | Not Available | Negative | 2346136 - 2346576 | 15728.7 |
| aminoacetone oxidase family fad-binding enzyme | DD563_11525 | Not Available | Negative | 2346605 - 2347786 | 41357.1 |
| mechanosensitive ion channel protein mscs | DD563_11530 | Not Available | Negative | 2347783 - 2349117 | 48644.5 |
| hnh endonuclease | DD563_11535 | Not Available | Positive | 2349188 - 2349487 | 11260.9 |
| uroporphyrinogen decarboxylase | DD563_11540 | Not Available | Negative | 2349484 - 2350518 | 36880.0 |
| hydroxymethylbilane synthase | DD563_11545 | Not Available | Positive | 2350617 - 2351576 | 34487.6 |
| fad-binding oxidoreductase | DD563_11550 | Not Available | Negative | 2351622 - 2353025 | 48983.9 |
| asnc family transcriptional regulator | DD563_11555 | Not Available | Negative | 2353030 - 2353266 | 8979.87 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
