Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Pelagicola sp. LXJ1103 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
607766 bp
Thymine Count
603262 bp
Guanine Count
942397 bp
Cytosine Count
950305 bp
Genome Length
3103730 bp
Protein-coding Genes
2946 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DD563_11460 | Not Available | Negative | 2334799 - 2335185 | 13461.0 |
| eama family transporter | DD563_11465 | Not Available | Negative | 2335244 - 2336110 | 31305.1 |
| fad-dependent oxidoreductase | DD563_11470 | Not Available | Negative | 2336107 - 2336793 | 24940.4 |
| fad-dependent oxidoreductase | DD563_11475 | Not Available | Positive | 2336861 - 2337934 | 36581.7 |
| hypothetical protein | DD563_11480 | Not Available | Positive | 2337924 - 2338415 | 18089.7 |
| yggs family pyridoxal phosphate-dependent enzyme | DD563_11485 | Not Available | Negative | 2338429 - 2339085 | 22817.5 |
| duf3576 domain-containing protein | DD563_11490 | Not Available | Positive | 2339271 - 2339747 | 16550.7 |
| gnat family n-acetyltransferase | DD563_11495 | Not Available | Positive | 2339851 - 2340303 | 17435.7 |
| glycosyl transferase | DD563_11500 | Not Available | Negative | 2340343 - 2341593 | 47431.3 |
| leucine--trna ligase | DD563_11505 | Not Available | Positive | 2341740 - 2344340 | 95996.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
