Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Pelagicola sp. LXJ1103 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
607766 bp
Thymine Count
603262 bp
Guanine Count
942397 bp
Cytosine Count
950305 bp
Genome Length
3103730 bp
Protein-coding Genes
2946 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| agmatinase | DD563_11410 | Not Available | Positive | 2325204 - 2326160 | 33785.0 |
| hypothetical protein | DD563_11415 | Not Available | Positive | 2326327 - 2326521 | 6913.42 |
| duf2794 domain-containing protein | DD563_11420 | Not Available | Negative | 2326535 - 2326870 | 12736.6 |
| hypothetical protein | DD563_11425 | Not Available | Negative | 2326951 - 2327214 | 9507.27 |
| s-(hydroxymethyl)glutathione dehydrogenase/class iii alcohol dehydrogenase | DD563_11430 | Not Available | Positive | 2327392 - 2328504 | 39110.3 |
| glutathione-dependent disulfide-bond oxidoreductase | DD563_11435 | Not Available | Positive | 2328641 - 2329489 | 31615.5 |
| maebl | DD563_11440 | Not Available | Positive | 2329559 - 2330257 | 25687.4 |
| 4-hydroxy-tetrahydrodipicolinate synthase | DD563_11445 | Not Available | Negative | 2330539 - 2331414 | 30783.2 |
| tail length tape measure protein | DD563_11450 | Not Available | Positive | 2331590 - 2333563 | 71482.2 |
| alpha-amylase | DD563_11455 | Not Available | Negative | 2333630 - 2334730 | 38848.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
