Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Pelagicola sp. LXJ1103 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
607766 bp
Thymine Count
603262 bp
Guanine Count
942397 bp
Cytosine Count
950305 bp
Genome Length
3103730 bp
Protein-coding Genes
2946 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| fumarylacetoacetase | DD563_11360 | Not Available | Positive | 2314800 - 2316056 | 45054.4 |
| mbl fold metallo-hydrolase | DD563_11365 | Not Available | Positive | 2316069 - 2317019 | 35116.2 |
| fad-dependent oxidoreductase | DD563_11370 | Not Available | Positive | 2317042 - 2318682 | 59933.2 |
| duf2783 domain-containing protein | DD563_11375 | Not Available | Positive | 2318685 - 2318891 | 7442.86 |
| is5 family transposase | DD563_11380 | Not Available | Positive | 2319388 - 2320145 | 28879.3 |
| hypothetical protein | DD563_11385 | Not Available | Positive | 2320428 - 2321621 | 45494.1 |
| carbonic anhydrase | DD563_11390 | Not Available | Negative | 2321697 - 2322347 | 23671.2 |
| hypothetical protein | DD563_11395 | Not Available | Positive | 2322521 - 2322910 | 14250.3 |
| leucyl aminopeptidase | DD563_11400 | Not Available | Positive | 2322995 - 2324374 | 47739.5 |
| nlp/p60 hydrolase | DD563_11405 | Not Available | Positive | 2324371 - 2325207 | 30008.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
