Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Pelagicola sp. LXJ1103 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
607766 bp
Thymine Count
603262 bp
Guanine Count
942397 bp
Cytosine Count
950305 bp
Genome Length
3103730 bp
Protein-coding Genes
2946 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| aspartate aminotransferase family protein | DD563_11310 | Not Available | Negative | 2304095 - 2305441 | 48003.4 |
| iclr family transcriptional regulator | DD563_11315 | Not Available | Negative | 2305438 - 2306247 | 28763.3 |
| transporter | DD563_11320 | Not Available | Positive | 2306364 - 2307308 | 32856.2 |
| hypothetical protein | DD563_11325 | Not Available | Positive | 2307383 - 2307922 | 20532.6 |
| hypothetical protein | DD563_11330 | Not Available | Positive | 2307938 - 2309455 | 53915.8 |
| aldehyde dehydrogenase | DD563_11335 | Not Available | Positive | 2309461 - 2310945 | 51333.9 |
| hypothetical protein | DD563_11340 | Not Available | Positive | 2310955 - 2312187 | 43101.4 |
| marr family transcriptional regulator | DD563_11345 | Not Available | Negative | 2312245 - 2312712 | 18065.4 |
| homogentisate 1,2-dioxygenase | DD563_11350 | Not Available | Positive | 2312808 - 2314166 | 50839.4 |
| maleylacetoacetate isomerase | DD563_11355 | Not Available | Positive | 2314163 - 2314798 | 23253.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
