Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Pelagicola sp. LXJ1103 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
607766 bp
Thymine Count
603262 bp
Guanine Count
942397 bp
Cytosine Count
950305 bp
Genome Length
3103730 bp
Protein-coding Genes
2946 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| mbl fold metallo-hydrolase | DD563_11260 | Not Available | Positive | 2290849 - 2291730 | 32023.1 |
| tigr01244 family phosphatase | DD563_11265 | Not Available | Positive | 2291745 - 2293418 | 60346.8 |
| sodium-independent anion transporter | DD563_11270 | Not Available | Positive | 2293474 - 2295192 | 60547.1 |
| hypothetical protein | DD563_11275 | Not Available | Positive | 2296974 - 2297339 | 13416.7 |
| hypothetical protein | DD563_11280 | Not Available | Positive | 2297566 - 2297970 | 14531.1 |
| nyn domain-containing protein | DD563_11285 | Not Available | Positive | 2298013 - 2298594 | 21846.1 |
| hypothetical protein | DD563_11290 | Not Available | Negative | 2298730 - 2301336 | 95686.1 |
| oxidoreductase | DD563_11295 | Not Available | Negative | 2301340 - 2301900 | 20062.1 |
| dna-binding response regulator | DD563_11300 | Not Available | Positive | 2302097 - 2302747 | 23332.3 |
| mbl fold metallo-hydrolase | DD563_11305 | Not Available | Negative | 2303226 - 2304083 | 30787.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
