Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Pelagicola sp. LXJ1103 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
607766 bp
Thymine Count
603262 bp
Guanine Count
942397 bp
Cytosine Count
950305 bp
Genome Length
3103730 bp
Protein-coding Genes
2946 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DD563_11210 | Not Available | Negative | 2284752 - 2285192 | 14792.2 |
| duf2474 domain-containing protein | DD563_11215 | Not Available | Negative | 2285221 - 2285331 | 4065.1 |
| cytochrome d ubiquinol oxidase subunit ii | DD563_11220 | Not Available | Negative | 2285331 - 2286332 | 36546.2 |
| cytochrome ubiquinol oxidase subunit i | DD563_11225 | Not Available | Negative | 2286344 - 2287753 | 51678.6 |
| peroxiredoxin | DD563_11230 | Not Available | Negative | 2287785 - 2288411 | 22985.3 |
| rrf2 family transcriptional regulator | DD563_11235 | Not Available | Positive | 2288523 - 2288987 | 17009.9 |
| crp/fnr family transcriptional regulator | DD563_11240 | Not Available | Positive | 2288984 - 2289658 | 24776.8 |
| duf2892 domain-containing protein | DD563_11245 | Not Available | Positive | 2289743 - 2289955 | 7485.73 |
| hypothetical protein | DD563_11250 | Not Available | Positive | 2289955 - 2290389 | 14605.7 |
| permease | DD563_11255 | Not Available | Positive | 2290393 - 2290830 | 15122.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
