Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Pelagicola sp. LXJ1103 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
607766 bp
Thymine Count
603262 bp
Guanine Count
942397 bp
Cytosine Count
950305 bp
Genome Length
3103730 bp
Protein-coding Genes
2946 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| Trna-ala | Not Available | Not Available | Positive | 2270438 - 2270513 | Not Available |
| 23s ribosomal rna | Not Available | Not Available | Positive | 2270912 - 2274366 | Not Available |
| 5s ribosomal rna | Not Available | Not Available | Positive | 2274450 - 2274564 | Not Available |
| Trna-met | Not Available | Not Available | Positive | 2274623 - 2274699 | Not Available |
| hypothetical protein | DD563_11175 | Not Available | Negative | 2275155 - 2279018 | 146453.0 |
| hypothetical protein | DD563_11180 | Not Available | Negative | 2279304 - 2280482 | 43780.9 |
| hypothetical protein | DD563_11185 | Not Available | Negative | 2280631 - 2280855 | 8506.89 |
| dna-binding protein | DD563_11190 | Not Available | Negative | 2280987 - 2281226 | 9490.11 |
| hypothetical protein | DD563_11195 | Not Available | Negative | 2281317 - 2282048 | 27805.3 |
| integrase | DD563_11200 | Not Available | Negative | 2282155 - 2283342 | 44807.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
