Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Pelagicola sp. LXJ1103 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
607766 bp
Thymine Count
603262 bp
Guanine Count
942397 bp
Cytosine Count
950305 bp
Genome Length
3103730 bp
Protein-coding Genes
2946 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | DD563_11105 | Not Available | Positive | 2260106 - 2261035 | 35267.2 |
| hypothetical protein | DD563_11110 | Not Available | Negative | 2261032 - 2262123 | 40181.5 |
| hypothetical protein | DD563_11115 | Not Available | Positive | 2262368 - 2263198 | 30744.3 |
| hypothetical protein | DD563_11120 | Not Available | Positive | 2263222 - 2263905 | 26056.0 |
| nex18 symbiotically induced protein | DD563_11125 | Not Available | Negative | 2264068 - 2264547 | 16329.5 |
| fmn-binding glutamate synthase family protein | DD563_11130 | Not Available | Positive | 2264825 - 2266318 | 53326.7 |
| protein-methionine-sulfoxide reductase catalytic subunit msrp | DD563_11135 | Not Available | Positive | 2266390 - 2267295 | 33996.5 |
| protein-methionine-sulfoxide reductase heme-binding subunit msrq | DD563_11140 | Not Available | Positive | 2267292 - 2267897 | 22675.9 |
| 16s ribosomal rna | Not Available | Not Available | Positive | 2268585 - 2270054 | Not Available |
| Trna-ile | Not Available | Not Available | Positive | 2270212 - 2270288 | Not Available |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
