Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Pelagicola sp. LXJ1103 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
607766 bp
Thymine Count
603262 bp
Guanine Count
942397 bp
Cytosine Count
950305 bp
Genome Length
3103730 bp
Protein-coding Genes
2946 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| apolipoprotein n-acyltransferase | DD563_00990 | Not Available | Positive | 201728 - 203242 | 53127.1 |
| methionine adenosyltransferase | DD563_00995 | Not Available | Positive | 203335 - 204516 | 42389.0 |
| trna (guanosine(46)-n7)-methyltransferase trmb | DD563_01000 | Not Available | Positive | 204714 - 205427 | 27303.6 |
| acetylornithine deacetylase | DD563_01005 | Not Available | Negative | 205450 - 206613 | 41510.5 |
| rtx toxin | DD563_01010 | Not Available | Positive | 206885 - 210127 | 109446.0 |
| transporter | DD563_01015 | Not Available | Positive | 210212 - 211510 | 45591.1 |
| abc transporter atp-binding protein | DD563_01020 | Not Available | Positive | 211507 - 213717 | 79913.0 |
| transporter | DD563_01025 | Not Available | Positive | 213719 - 214906 | 44125.8 |
| eama family transporter | DD563_01030 | Not Available | Negative | 214931 - 215800 | 29674.3 |
| primosomal protein n' (replication factor y) - superfamily ii helicase | DD563_01035 | Not Available | Negative | 215925 - 217061 | 42255.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
