Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Pelagicola sp. LXJ1103 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
607766 bp
Thymine Count
603262 bp
Guanine Count
942397 bp
Cytosine Count
950305 bp
Genome Length
3103730 bp
Protein-coding Genes
2946 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| nadph-dependent fmn reductase | DD563_11055 | Not Available | Positive | 2248722 - 2249255 | 18897.8 |
| fad-dependent oxidoreductase | DD563_11060 | Not Available | Negative | 2249259 - 2250500 | 45175.6 |
| 50s ribosomal protein l36 | DD563_11065 | Not Available | Negative | 2250797 - 2250922 | 5068.35 |
| Trna-val | Not Available | Not Available | Positive | 2251002 - 2251076 | Not Available |
| n-formylglutamate amidohydrolase | DD563_11075 | Not Available | Positive | 2251228 - 2252091 | 31390.5 |
| dna polymerase iv | DD563_11080 | Not Available | Negative | 2252095 - 2253351 | 45777.4 |
| orotidine-5'-phosphate decarboxylase | DD563_11085 | Not Available | Negative | 2253490 - 2254185 | 23930.8 |
| atp-dependent chaperone clpb | DD563_11090 | Not Available | Positive | 2254444 - 2257062 | 95060.0 |
| gnat family n-acetyltransferase | DD563_11095 | Not Available | Positive | 2257299 - 2257838 | 18960.6 |
| glycosyltransferase family 2 protein | DD563_11100 | Not Available | Positive | 2258062 - 2260101 | 77037.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
