Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Pelagicola sp. LXJ1103 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
607766 bp
Thymine Count
603262 bp
Guanine Count
942397 bp
Cytosine Count
950305 bp
Genome Length
3103730 bp
Protein-coding Genes
2946 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| udp-glucose 6-dehydrogenase | DD563_11005 | Not Available | Negative | 2238820 - 2240151 | 48152.1 |
| kpsf/gutq family sugar-phosphate isomerase | DD563_11010 | Not Available | Positive | 2240333 - 2241292 | 33179.3 |
| hypothetical protein | DD563_11015 | Not Available | Negative | 2241515 - 2241736 | 8282.91 |
| duf2177 domain-containing protein | DD563_11020 | Not Available | Positive | 2242180 - 2242587 | 14962.6 |
| peptidoglycan-binding protein | DD563_11025 | Not Available | Negative | 2242608 - 2243117 | 17671.3 |
| 2fe-2s ferredoxin | DD563_11030 | Not Available | Positive | 2243413 - 2243736 | 11776.0 |
| hypothetical protein | DD563_11035 | Not Available | Positive | 2243742 - 2244443 | 24920.9 |
| phosphoribosylamine--glycine ligase | DD563_11040 | Not Available | Negative | 2244463 - 2245725 | 43663.3 |
| exodeoxyribonuclease vii large subunit | DD563_11045 | Not Available | Positive | 2245845 - 2247401 | 55624.3 |
| lysr family transcriptional regulator | DD563_11050 | Not Available | Positive | 2247612 - 2248517 | 32979.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
