Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Pelagicola sp. LXJ1103 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
607766 bp
Thymine Count
603262 bp
Guanine Count
942397 bp
Cytosine Count
950305 bp
Genome Length
3103730 bp
Protein-coding Genes
2946 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glycosyl transferase family 2 | DD563_10955 | Not Available | Negative | 2229693 - 2230736 | 40233.1 |
| udp-glucose 4-epimerase gale | DD563_10960 | Not Available | Negative | 2230794 - 2231777 | 35786.1 |
| utp--glucose-1-phosphate uridylyltransferase | DD563_10965 | Not Available | Negative | 2231805 - 2232698 | 32550.2 |
| mate family efflux transporter | DD563_10970 | Not Available | Positive | 2232947 - 2234293 | 46471.6 |
| 3-deoxy-manno-octulosonate cytidylyltransferase | DD563_10975 | Not Available | Negative | 2234290 - 2235090 | 29014.4 |
| 3'(2'),5'-bisphosphate nucleotidase | DD563_10980 | Not Available | Negative | 2235087 - 2235884 | 28427.4 |
| abc transporter permease | DD563_10985 | Not Available | Positive | 2236014 - 2236835 | 30422.0 |
| vanz family protein | DD563_10990 | Not Available | Positive | 2236835 - 2237182 | 11906.1 |
| bifunctional nicotinamidase/pyrazinamidase | DD563_10995 | Not Available | Negative | 2237169 - 2237765 | 20872.8 |
| hypothetical protein | DD563_11000 | Not Available | Positive | 2237884 - 2238798 | 33568.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
