Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Pelagicola sp. LXJ1103 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
607766 bp
Thymine Count
603262 bp
Guanine Count
942397 bp
Cytosine Count
950305 bp
Genome Length
3103730 bp
Protein-coding Genes
2946 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| aminoacyl-trna hydrolase | DD563_10905 | Not Available | Positive | 2221036 - 2221455 | 15729.1 |
| ribonuclease d | DD563_10910 | Not Available | Positive | 2221562 - 2222173 | 22556.1 |
| hypothetical protein | DD563_10915 | Not Available | Positive | 2222174 - 2222788 | 21792.9 |
| lipopolysaccharide transport periplasmic protein lpta | DD563_10920 | Not Available | Positive | 2222812 - 2223282 | 16152.2 |
| lps export abc transporter atp-binding protein | DD563_10925 | Not Available | Positive | 2223279 - 2224037 | 28024.1 |
| ribosome-associated translation inhibitor raia | DD563_10930 | Not Available | Positive | 2224279 - 2224842 | 20641.6 |
| pts lactose transporter subunit iic | DD563_10935 | Not Available | Positive | 2224896 - 2225360 | 16307.8 |
| nodulation protein nodh | DD563_10940 | Not Available | Negative | 2225386 - 2226813 | 53466.7 |
| glycosyl transferase | DD563_10945 | Not Available | Negative | 2226820 - 2228520 | 64988.5 |
| glycosyl transferase family 2 | DD563_10950 | Not Available | Negative | 2228540 - 2229526 | 38706.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
