Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Pelagicola sp. LXJ1103 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
607766 bp
Thymine Count
603262 bp
Guanine Count
942397 bp
Cytosine Count
950305 bp
Genome Length
3103730 bp
Protein-coding Genes
2946 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| nodulation protein nodn | DD563_10855 | Not Available | Negative | 2206100 - 2206543 | 15936.0 |
| ribulose-phosphate 3-epimerase | DD563_10860 | Not Available | Positive | 2206689 - 2207375 | 24029.1 |
| hypothetical protein | DD563_10865 | Not Available | Negative | 2207392 - 2212203 | 170526.0 |
| hybrid sensor histidine kinase/response regulator | DD563_10870 | Not Available | Positive | 2212347 - 2214542 | 80458.7 |
| peroxide stress protein yaaa | DD563_10875 | Not Available | Negative | 2214547 - 2215323 | 27951.4 |
| dna helicase recq | DD563_10880 | Not Available | Negative | 2215356 - 2217395 | 74044.4 |
| yggt family protein | DD563_10885 | Not Available | Negative | 2217476 - 2217763 | 10894.0 |
| thioeseterase | DD563_10890 | Not Available | Positive | 2217890 - 2218438 | 20695.4 |
| mfs transporter | DD563_10895 | Not Available | Positive | 2218498 - 2219832 | 47584.9 |
| penicillin-insensitive murein endopeptidase | DD563_10900 | Not Available | Positive | 2219829 - 2220719 | 32470.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
