Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Pelagicola sp. LXJ1103 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
607766 bp
Thymine Count
603262 bp
Guanine Count
942397 bp
Cytosine Count
950305 bp
Genome Length
3103730 bp
Protein-coding Genes
2946 genes
Non-Coding Genes
61 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| chorismate synthase | DD563_10805 | Not Available | Positive | 2195121 - 2196227 | 39090.6 |
| acetolactate synthase isozyme1 large subunit | DD563_10810 | Not Available | Negative | 2196344 - 2197939 | 56576.4 |
| potassium transporter trkh | DD563_10815 | Not Available | Negative | 2197939 - 2199387 | 51416.4 |
| gntr family transcriptional regulator | DD563_10820 | Not Available | Positive | 2199500 - 2200204 | 26040.2 |
| dihydrodipicolinate synthase family protein | DD563_10825 | Not Available | Positive | 2200194 - 2201102 | 32811.6 |
| hypothetical protein | DD563_10830 | Not Available | Positive | 2201127 - 2201486 | 13224.9 |
| fad-dependent oxidoreductase | DD563_10835 | Not Available | Positive | 2201494 - 2202825 | 47275.7 |
| cu(i)-responsive transcriptional regulator | DD563_10840 | Not Available | Negative | 2202829 - 2203215 | 14028.8 |
| heavy metal translocating p-type atpase | DD563_10845 | Not Available | Negative | 2203212 - 2205641 | 83008.5 |
| paai family thioesterase | DD563_10850 | Not Available | Negative | 2205696 - 2206103 | 14723.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
